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The recent development of biological sensors has extended marine plankton studies from conducting laboratory bench work to in vivo and real-time observations. Flow cytometry (FCM) has shed new light on marine microorganisms since the 1980s through its single-cell approach and robust detection of the smallest cells. FCM records valuable optical properties of light scattering and fluorescence from cells passing in a single file in front of a narrow-collimated light source, recording tens of thousands of cells within a few minutes. Depending on the instrument settings, the sampling strategy, and the automation level, it resolves the spatial and temporal distribution of microbial marine prokaryotes and eukaryotes. Cells are usually classified and grouped on cytograms by experts and are still lacking standards, reducing data sharing capacities. Therefore, the need to make FCM data sets FAIR (Findability, Accessibility, Interoperability, and Reusability of digital assets) is becoming critical. In this paper, we present a consensus vocabulary for the 13 most common marine microbial groups observed with FCM using blue and red-light excitation. The authors designed a common layout on two-dimensional log-transformed cytograms reinforced by a decision tree that facilitates the characterization of groups. The proposed vocabulary aims at standardising data analysis and definitions, to promote harmonisation and comparison of data between users and instruments. This represents a much-needed step towards FAIRification of flow cytometric data collected in various marine environments. 

Cross-platform observing systems are requisite to capturing the temporal and spatial dynamics of particles in the ocean. We present simultaneous observations of bulk optical properties, including the particulate beam attenuation (${\mathit{\text{c}}}_{\mathit{\text{p}}}$) and backscattering ($b_{\text{bp}}$) coefficients, and particle size distributions collected in the North Pacific Subtropical Gyre. Clear and coherent diel cycles are observed in all bulk and size-fractionated optical proxies for particle biomass. We show evidence linking diurnal increases in${\mathit{\text{c}}}_{\mathit{\text{p}}}$and${\mathit{\text{b}}}_{\text{bp}}$to daytime particle growth and division of cells, with particles$<<\#comment/>7\text{µ<\#comment/>}\mathrm{m}$driving the daily cycle of particle production and loss within the mixed layer. Flow cytometry data reveal the nitrogen-fixing cyanobacteriumCrocosphaera($\sim <\#comment/>4-<\#comment/>7\text{µ<\#comment/>}\mathrm{m}$) to be an important driver of${\mathit{\text{c}}}_{\mathit{\text{p}}}$at the time of sampling, whereasProchlorococcusdynamics ($\sim <\#comment/>0.5\text{µ<\#comment/>}\mathrm{m}$) were essential to reproducing temporal variability in${\mathit{\text{b}}}_{\text{bp}}$. This study is a step towards improved characterization of the particle size range represented byin situbulk optical properties and a better understanding of the mechanisms that drive variability in particle production in the oligotrophic open ocean.

 

From June to August 2018, the eruption of Kīlauea volcano on the island of Hawai‘i injected millions of cubic meters of molten lava into the nutrient-poor waters of the North Pacific Subtropical Gyre. The lava-impacted seawater was characterized by high concentrations of metals and nutrients that stimulated phytoplankton growth, resulting in an extensive plume of chlorophyll a that was detectable by satellite. Chemical and molecular evidence revealed that this biological response hinged on unexpectedly high concentrations of nitrate, despite the negligible quantities of nitrogen in basaltic lava. We hypothesize that the high nitrate was caused by buoyant plumes of nutrient-rich deep waters created by the substantial input of lava into the ocean. This large-scale ocean fertilization was therefore a unique perturbation event that revealed how marine ecosystems respond to exogenous inputs of nutrients. 

The cycling of biologically produced calcium carbonate (CaCO₃) in the ocean is a fundamental component of the global carbon cycle. Here, we present experimental determinations of in situ coccolith and foraminiferal calcite dissolution rates. We combine these rates with solid phase fluxes, dissolved tracers, and historical data to constrain the alkalinity cycle in the shallow North Pacific Ocean. The in situ dissolution rates of coccolithophores demonstrate a nonlinear dependence on saturation state. Dissolution rates of all three major calcifying groups (coccoliths, foraminifera, and aragonitic pteropods) are too slow to explain the patterns of both CaCO₃sinking flux and alkalinity regeneration in the North Pacific. Using a combination of dissolved and solid‐phase tracers, we document a significant dissolution signal in seawater supersaturated for calcite. Driving CaCO₃dissolution with a combination of ambient saturation state and oxygen consumption simultaneously explains solid‐phase CaCO₃flux profiles and patterns of alkalinity regeneration across the entire N. Pacific basin. We do not need to invoke the presence of carbonate phases with higher solubilities. Instead, biomineralization and metabolic processes intimately associate the acid (CO₂) and the base (CaCO₃) in the same particles, driving the coupled shallow remineralization of organic carbon and CaCO₃. The linkage of these processes likely occurs through a combination of dissolution due to zooplankton grazing and microbial aerobic respiration within degrading particle aggregates. The coupling of these cycles acts as a major filter on the export of both organic and inorganic carbon to the deep ocean.